Nuclear Factor I family members are key transcription factors regulating gene expression

Approved

Classifications

MinEdu publication type
A1 Journal article (peer-reviewed)
Definition
Article
Target group
Scientific
Peer reviewed
Peer-reviewed
Article type
Journal article
Host publication type
Journal

Authors of the publication

Number of authors
12
Authors
Pinar, Dicle Malaymar; Göös, Helka; Tan, Zenglai; Kumpula, Esa-Pekka; Chowdhury, Iftekhar; Wang, Zixian; Zhang, Qin; Salokas, Kari; Keskitalo, Salla; Wei, Gong-Hong; Kumbasar, Asli; Varjosalo, Markku
Local authors
Author
Tan, Zenglai

Publication channel information

Title of journal/series
Molecular and cellular proteomics
ISSN (print)
1535-9476
ISSN (electronic)
1535-9484
ISSN (linking)
1535-9476
Publisher
Elsevier
Publication forum ID
63500
Publication forum level
2
Country of publication
United States
Internationality
Yes

Detailed publication information

Publication year
2024
Reporting year
2024
Journal/series volume number
2025: 24
Journal/series issue number
1
Article number
100890
DOI
10.1016/j.mcpro.2024.100890
Language of publication
English

Co-publication information

International co-publication
Yes
Co-publication with a company
No

Availability

Classification and additional information

MinEdu field of science classification
1182 Biochemistry, cell and molecular biology
Keywords
Affinity purification; BioID; ChIP-Seq; Nuclear Factor I; Protein-protein interactions; Proximity dependent biotinylation; Transcription factors; interaction proteomics; mass spectrometry; transcriptional regulation

Funding information

Funding information in the publication
This research was funded by the Academy of Finland (nos. 288475 and 294173), the Sigrid Jusélius Foundation, the Finnish Cancer Foundation, Biocenter Finland, and HiLIFE to M. V. Additionally, this study was supported by grants from the Scientific and Technological Research Council of Tűrkiye (TUBITAK-120Z833) and Istanbul Technical University Scientific Research Projects Foundation (TDK-2021-42885).

Research data information

Research data information in the publication
The raw mass spectrometry file names for all samples in this study (a total of 84 runs) are detailed in Dataset S5. All raw mass spectrometry data have been deposited in the MassIVE repository (massive.ucsd.edu; accession number: MSV000095163). Protein identification files from FragPipe v21.1 with MSFragger-4.0 search are given in Dataset S6 (HEK-BioID-16h), Dataset S7 (HEK-BioID-3h), Dataset S8 (HEK-AP-MS), Dataset S9 (SH-SY5Y-BioID), Dataset S10 (U251-BioID) including all individual sample files. All raw ChIP-seq data have been deposited in the European Nucleotide Archive (ENA) under accession ID PRJEB79158.

Source database ID

WoS ID
WOS:001397904000001
Scopus ID
2-s2.0-85215698754
Other database ID
PMID: 39617063